PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004947-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 528aa    MW: 58520.7 Da    PI: 6.9091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004947-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.4e-13382428455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  NNU_004947-RA 382 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 428
                    799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-5148240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-14381432No hitNo description
SuperFamilySSF474593.79E-18381445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17382441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10382428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGDKFWGSEE EKAIAEAVLG AEACQFLTLP APRHVSQDLV LPAVEGGMQR QLSQLVEGLG  60
WTYAIFWRAS RSKSGEMTLV WGDGHCREPK GGEREGGREG KGSYGDFESH KRVGGEQEQE  120
MRKRVLQKLH AFFGGSEDDN YAVRLDSVSD VEMFYLTSMY YSFPYDSQAA PARSFASSRS  180
IWASDAKSCS DNYHSRSFLA RSVGFRTMVC VPIESGVVEL GSVKSFPEDH NVLQRIKNVF  240
GGSRSVQATV TPKIFGQDLN LGGTKSRSVN ISFSPKVEED EGLPSESYKV QATVSRPGNT  300
LVLNAETSSN RTFGTFSNGC GSEGNEVKLF PQTSQMVMGG LTPQSRVSGL EEIKDDPLPR  360
PDERRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA  420
ITYITDLQMK IRVLETEREM VDGNQNPSII PEIDVQTRHE DTVVRVSCPL DAHPVSGVIK  480
AFRETQVMVQ DSKVSTTDDG SVLHTFSIRT QNGASEHLKE KLVAALSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-22452406192Transcription factor MYC3
4rqw_B4e-22452406192Transcription factor MYC3
4rs9_A4e-22452406192Transcription factor MYC3
4yz6_A4e-22452406192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363371RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252341.10.0PREDICTED: transcription factor bHLH3
RefseqXP_010252342.10.0PREDICTED: transcription factor bHLH3
TrEMBLA0A067FM980.0A0A067FM98_CITSI; Uncharacterized protein
STRINGVIT_07s0141g01060.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-147bHLH family protein